Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M30 Chr1q_UniqueNum	BreastC_M30 Chr1q_pVal	BreastC_M30 Chr1q_Unique	BreastC_M30 Chr1q_UniqueNum	BreastC_M30 Chr1q_pVal	BreastC_M30 Chr1q_Unique
ACEVEDO_LIVER_CANCER_UP	81	ABCB10|ACBD3|ACBD6|ADAM15|ADIPOR1|AHCTF1|ANGEL2|ARPC5|ARV1|ATF6|BAIAP2L1|BOLA1|C1ORF35|C1ORF131|CCT3|CD46|CHTOP|CNIH4|COPA|DESI2|DUSP12|DUSP23|EPRS|F11R|FBXO28|GBA|GGPS1|GNPAT|GOLPH3L|GPR137B|HEATR1|IARS2|ILF2|IRF6|KCTD3|KDM5B|KHDC4|KIFAP3|KLHL12|KLHL20|LPGAT1|LYPLAL1|METTL13|MR1|MRPL9|NIPSNAP2|NTAN1|NTPCR|NUP133|PARP1|PEX19|PIGC|PMF1|PPP2R5A|PRPF3|RBBP5|RBM34|RFX5|RRP15|SDHC|SLC50A1|SSR2|TAGLN2|TEAD2|TFB2M|TIPRL|TMCO1|TMEM9|TMEM183A|TOR1AIP1|TP53BP2|TRMT1L|TSEN15|TSNAX|UAP1|UBE2Q1|UCHL5|UFC1|VPS45|WDR26|XPR1	9.25198010182e-29	0	9.25198010182e-29		0	9.25198010182e-29	
ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP	83	ACBD3|ACBD6|ADIPOR1|ARV1|BOLA1|C1ORF35|C1ORF53|C1ORF74|C1ORF131|C1ORF198|CNIH4|COPA|DEGS1|DUSP12|EIF2D|EPRS|FAM20B|GBA|GGPS1|GLMP|GNPAT|GOLPH3L|GPR137B|HAX1|IARS2|ILF2|IRF6|KCTD3|KDM5B|KHDC4|KIFAP3|KLHL12|KLHL20|LPGAT1|LYPLAL1|METTL13|MGST3|MPC2|MRPL9|MRPL24|MRPS21|MTX1|NTPCR|NUP133|PARP1|PEA15|PEX19|PIGC|PIGM|POGK|PPOX|PPP2R5A|PSEN2|PSMB4|RBBP5|RBM34|RFX5|RRP15|SCAMP3|SDHC|SF3B4|SLC39A1|SLC50A1|SNAP47|SNX27|SSR2|TAGLN2|TBCE|TEAD2|TFB2M|TIPRL|TMEM9|TMEM183A|TOR1AIP1|TP53BP2|TRMT1L|TSEN15|TSNAX|UBE2Q1|UCHL5|UFC1|VPS45|XPR1	7.20070380057e-34	0	7.20070380057e-34		0	7.20070380057e-34	
AML1_01	17	ARHGEF2|ARNT|C1ORF198|CRTC2|EDARADD|GPR137B|GRHL3|HDGF|MR1|MTX1|SH3BP5L|SMG7|SWT1|TACSTD2|TMCO1|TRMT1L|ZBTB18	1.73039159956e-05	0	1.73039159956e-05		0	1.73039159956e-05	
AML1_Q6	17	ARHGEF2|ARNT|C1ORF198|CRTC2|EDARADD|GPR137B|GRHL3|HDGF|MR1|MTX1|SH3BP5L|SMG7|SWT1|TACSTD2|TMCO1|TRMT1L|ZBTB18	1.73039159956e-05	0	1.73039159956e-05		0	1.73039159956e-05	
BENPORATH_PROLIFERATION	15	ARF1|CNIH4|DAP3|DESI2|DIEXF|ILF2|LGALS8|MRPL9|PARP1|PFDN2|PSMB4|RBM8A|RIT1|TP53BP2|WDR26	4.56770468871e-07	0	4.56770468871e-07		0	4.56770468871e-07	
BIOCARTA_RHO_PATHWAY	5	ARHGEF5|ARHGEF11|ARPC4|ARPC5|PIP5K1A	0.000420226968329	0	0.000420226968329		0	0.000420226968329	
BORCZUK_MALIGNANT_MESOTHELIOMA_UP	28	ACBD3|ARPC4|CCT3|CHTOP|COPA|DESI2|DIEXF|EPRS|HDGF|IARS2|ILF2|ISG20L2|JTB|KDM5B|KIFAP3|LPGAT1|MAPKAPK2|METTL18|MPC2|MPZL1|NDUFS2|PARP1|PIGC|RIT1|RNF2|SCAMP3|TAF5L|UBAP2L	3.48461073991e-11	0	3.48461073991e-11		0	3.48461073991e-11	
BOYAULT_LIVER_CANCER_SUBCLASS_G1_UP	13	B4GALT3|EDEM3|F11R|KCTD3|KDM5B|MPZL1|NTAN1|NUP133|RABIF|RBM8A|SETDB1|SMG7|TLR5	3.99548149579e-07	0	3.99548149579e-07		0	3.99548149579e-07	
BOYAULT_LIVER_CANCER_SUBCLASS_G12_UP	14	ARF1|CAMSAP2|EFNA1|LPGAT1|PIGC|PRCC|RBM34|RCOR3|RPS6KC1|SCAMP3|TOR3A|TTC13|WDR26|YY1AP1	2.19929685324e-14	0	2.19929685324e-14		0	2.19929685324e-14	
BOYAULT_LIVER_CANCER_SUBCLASS_G123_UP	10	CCT3|DUSP12|ENAH|ISG20L2|MRPL9|POGK|SHC1|SNRPE|SUCO|UBAP2L	2.3235394154e-08	0	2.3235394154e-08		0	2.3235394154e-08	
CAIRO_HEPATOBLASTOMA_UP	25	ANGEL2|CAMSAP2|CCT3|CD46|COQ8A|FDPS|GNPAT|HEATR1|ILF2|KDM5B|KHDC4|MPZL1|MTR|NUP133|PRUNE1|PSMD4|RBM34|RCOR3|RPS6KC1|SUCO|TBCE|TOMM20|TOR3A|UBAP2L|VPS45	1.38424605708e-12	0	1.38424605708e-12		0	1.38424605708e-12	
CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP	26	APH1A|ARHGEF5|BOLA1|C1ORF43|C6ORF132|CDC42SE1|EFNA4|ELF3|ENSA|F11R|FLAD1|IRF6|ISG20L2|JTB|NECTIN4|PEX11B|PPP2R5A|RAB25|RUSC1|SCYL3|SLC37A1|SUCO|TMEM79|TMEM183A|UBQLN4|VPS45	1.8814720204e-06	0	1.8814720204e-06		0	1.8814720204e-06	
CHEN_LIVER_METABOLISM_QTL_CIS	30	B4GALT3|BPNT1|C1ORF53|CEP170|COPA|DSTYK|DUSP12|DUSP23|F11R|FAM20B|GLRX2|IARS2|IGSF8|MRPS14|NENF|NIT1|NME7|ODR4|PIGM|PPOX|RPS6KC1|SDHC|TATDN3|TLR5|TMEM183A|TOR1AIP1|TSEN15|UAP1|UCHL5|USF1	5.40678389753e-28	0	5.40678389753e-28		0	5.40678389753e-28	
E2F_Q2	21	ADIPOR1|APH1A|C1ORF43|CDC73|DAP3|EFNA3|HTR7|LAMTOR2|MAPKAPK2|MPC2|MPZL1|ODR4|PPP2R5A|RABIF|RNF2|RNF207|SDCCAG8|SFT2D2|SNX27|TPM3|USF1	3.61039938293e-11	0	3.61039938293e-11		0	3.61039938293e-11	
ETF_Q6	17	C1ORF43|CDC73|CRTC2|DAP3|EFNA3|ELK4|RNF2|RPRD2|RUSC1|SCYL3|SLC41A1|UCHL5|USP21|XPR1|ZBTB41|ZNF496|ZNF687	1.43912565001e-10	0	1.43912565001e-10		0	1.43912565001e-10	
GGAANCGGAANY_UNKNOWN	9	EIF2S3|MOCS3|MRPS21|PRPF3|PSMB4|SLC25A44|SNRPE|TFB2M|TMCO1	0.000284388715151	0	0.000284388715151		0	0.000284388715151	
GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN	17	ARHGEF2|ARHGEF11|CDC42SE1|DENND4B|KHDC4|MSTO1|PIP5K1A|RNF207|SETDB1|SH3BP5L|SMG5|SMG7|TICAM1|TTC13|UBAP2L|URB2|USP21	0.000331973889914	0	0.000331973889914		0	0.000331973889914	
GSE1925_3H_VS_24H_IFNG_STIM_IFNG_PRIMED_MACROPHAGE_UP	13	ABCB10|CLK2|JTB|KIFAP3|MCL1|NDUFS2|NIPSNAP2|S100A13|TAGLN2|TBCE|TMCO1|TNFRSF18|TSEN15	0.00021646406329	0	0.00021646406329		0	0.00021646406329	
GSE2770_UNTREATED_VS_ACT_CD4_TCELL_2H_UP	12	ACP6|CAPN2|ETV3|GGPS1|GPR137B|PBXIP1|PCP4|SCAMP3|SLC50A1|SNAP47|TATDN3|TNFRSF18	0.000803629453188	0	0.000803629453188		0	0.000803629453188	
GSE7460_CTRL_VS_TGFB_TREATED_ACT_CD8_TCELL_UP	12	DAP3|DIEXF|GUK1|HAX1|KIFAP3|LPGAT1|RNPEP|SCAMP3|SHC1|SMAD3|TAGLN2|TSEN15	0.000879026617064	0	0.000879026617064		0	0.000879026617064	
GSE11924_TH1_VS_TH2_CD4_TCELL_UP	12	AIDA|C1ORF131|DIEXF|MRPS21|NTAN1|PAQR6|SMG7|SNX27|SWT1|TAF5L|TAGLN2|UBQLN4	0.000527710601756	0	0.000527710601756		0	0.000527710601756	
GSE13493_CD4INTCD8POS_VS_CD8POS_THYMOCYTE_UP	12	CHTOP|CNIH4|DESI2|EDARADD|KCTD3|KDM5B|NAXE|NDUFS2|RFX5|SRP9|TATDN3|TOR1AIP2	0.000700711833621	0	0.000700711833621		0	0.000700711833621	
GSE14908_ATOPIC_VS_NONATOPIC_PATIENT_RESTING_CD4_TCELL_DN	12	ALDH9A1|ATF6|CHD1L|COA6|DIEXF|EIF2D|EXOC8|INTS3|KIFAP3|RNPEP|TNIP2|TOMM40L	0.000733713724424	0	0.000733713724424		0	0.000733713724424	
GSE14908_RESTING_VS_HDM_STIM_CD4_TCELL_ATOPIC_PATIENT_UP	12	ALDH9A1|ATF6|EIF2S3|FDPS|GLRX2|KIFAP3|NIT1|NME7|PSMB4|THNSL1|TMEM183A|UFC1	0.000768006519638	0	0.000768006519638		0	0.000768006519638	
GSE15659_RESTING_VS_ACTIVATED_TREG_DN	12	DESI2|NECTIN4|PPP2R5A|RBM41|RIT1|RUSC1|SLC39A1|SPATA2|TIPRL|TOR1AIP1|TSNAX|ZNF678	0.000392154097369	0	0.000392154097369		0	0.000392154097369	
GSE17186_NAIVE_VS_CD21LOW_TRANSITIONAL_BCELL_UP	14	ARF1|ATF6|CDC73|DAP3|DENND4B|DUSP12|JTB|KRTCAP2|PEX11B|PIGM|SCAMP3|SDHC|SMAD3|SSR2	5.96721489989e-05	0	5.96721489989e-05		0	5.96721489989e-05	
GSE17721_LPS_VS_GARDIQUIMOD_2H_BMDC_DN	13	ANGEL2|CDC42SE1|COA6|DESI2|EDEM3|GGPS1|GUK1|MRPS14|NDUFS2|PBXIP1|SRP9|TOR3A|TSEN15	0.000277932658443	0	0.000277932658443		0	0.000277932658443	
GSE17721_LPS_VS_GARDIQUIMOD_6H_BMDC_DN	13	COA6|DESI2|GLMP|HDGF|LPGAT1|MIA3|MRPS14|PBXIP1|SSR2|TFB2M|TP53RK|TSNAX|XPR1	0.000167036026635	0	0.000167036026635		0	0.000167036026635	
GSE22886_NEUTROPHIL_VS_MONOCYTE_DN	12	CAPN2|CCT3|EPRS|GNPAT|LGALS3|LGALS8|MGST3|NIPSNAP2|OPN3|PEA15|TOMM20|UFC1	0.000733713724424	0	0.000733713724424		0	0.000733713724424	
GSE29164_CD8_TCELL_VS_CD8_TCELL_AND_IL12_TREATED_MELANOMA_DAY3_UP	12	BPNT1|CAMSAP2|CEP170|IARS2|KLHL20|PPP1R15B|RBM41|RNF2|STX6|URB2|YOD1|ZNF672	0.00091888327305	0	0.00091888327305		0	0.00091888327305	
GSE29617_CTRL_VS_DAY3_TIV_FLU_VACCINE_PBMC_2008_DN	12	ARPC4|ARV1|FH|FOLR3|HAX1|KCTD3|MRPS14|NEK7|NSL1|PSMD4|TMCO1|TSNAX	0.000609070984523	0	0.000609070984523		0	0.000609070984523	
GSE40666_STAT1_KO_VS_STAT4_KO_CD8_TCELL_UP	12	AIDA|COQ8A|DSTYK|KCTD3|METTL13|NVL|PARP1|PRUNE1|SETDB1|TMEM161B-AS1|TOR1AIP1|VPS72	0.000768006519638	0	0.000768006519638		0	0.000768006519638	
GSE41867_MEMORY_VS_EXHAUSTED_CD8_TCELL_DAY30_LCMV_DN	12	ATF6|CAPN2|DCAF6|DYRK3|GALNT2|JTB|KRTCAP2|MPC2|MRPS14|PPP1R15B|UAP1|ZNF496	0.000879026617064	0	0.000879026617064		0	0.000879026617064	
GSE43955_TH0_VS_TGFB_IL6_TH17_ACT_CD4_TCELL_4H_DN	12	CLK2|F11R|HDGF|LGALS8|MRPL9|PEX19|PRUNE1|RNPEP|SMAD3|STX6|TOR1AIP2|TOR3A	0.000700711833621	0	0.000700711833621		0	0.000700711833621	
Human BoneMarrow_Zhan07_458genes (17023574-TableS2)	19	ACBD6|ARV1|C1ORF43|CCT3|COX20|EDEM3|EGLN1|ELK4|GLMP|KLHL20|LYPLAL1|MAPKAPK2|MPC2|MRPL24|PIGM|RBM8A|SDE2|TIPRL|TTC13	0.000130394739865	0	0.000130394739865		0	0.000130394739865	
Human HeadandNeck_Jarvinen06_739genes (16715129-SuppTable2)	41	ACBD6|ADAM15|APH1A|ARHGEF5|ARPC5|ATF6|C1ORF35|C1ORF131|CLK2|DCAF6|DYRK3|EFNA4|GABPB2|GALNT2|GNPAT|GPR137B|HDGF|KCNK1|KHDC4|KLHL20|LPGAT1|MRPS14|MSTO1|NECTIN4|NUP133|NVL|PAQR6|PBXIP1|PFKFB2|PMF1|PRUNE1|PSEN2|RAB3GAP2|RIT1|SMG7|SNX27|SWT1|TAF5L|UBE2Q1|VPS45|YY1AP1	8.31748794436e-10	0	8.31748794436e-10		0	8.31748794436e-10	
Human Leukemia_Walker06_341genes (16705090-TableS2)	71	ALDH9A1|ANGEL2|ARF1|ARPC5|ARV1|ATF6|B4GALT3|BPNT1|C1ORF43|C1ORF53|CAMSAP2|CCT3|CD46|CDC73|CHTOP|CNIH4|COA6|COPA|COX20|DAP3|DEDD|DPM3|EGLN1|ENSA|FLAD1|GLRX2|GNPAT|GUK1|HAX1|ILF2|JMJD4|LAMTOR2|LYPLAL1|MGST3|MPZL1|MRPL24|MRPS14|MTX1|NDUFS2|NTPCR|PEX19|PFDN2|PIGC|POLR3C|PPP1R15B|PRDX6|PSEN2|PSMB4|PSMD4|RABIF|RBM8A|RBM34|RCOR3|RNPEP|SDHC|SF3B4|SFT2D2|SLC39A1|SNAP47|SNAPIN|SNRPE|SRP9|SUSD4|TIPRL|TMCO1|TOMM20|TRIM11|TSEN15|VAMP4|ZNF124|ZNF672	2.70622775808e-54	0	2.70622775808e-54		0	2.70622775808e-54	
Human Liver_Skawran08_43genes_ComparisonGeneSetEnrichment (18277965-Table5)	8	ARID4B|CCT3|GNPAT|MRPL55|NAXE|PYGO2|SCAMP3|TBCE	3.7876917359e-07	0	3.7876917359e-07		0	3.7876917359e-07	
Human Liver_Skawran08_43genes_DysregulatedinSAM_GSEA (18277965-Table6)	8	ARID4B|CCT3|GNPAT|MRPL55|NAXE|PYGO2|SCAMP3|TBCE	4.82123815075e-07	0	4.82123815075e-07		0	4.82123815075e-07	
Human Liver_Skawran08_171genes (18277965-TableS1a)	21	ANGEL2|ARID4B|B3GALNT2|CCT3|COQ8A|FAM20B|GNPAT|GPATCH4|ISG20L2|KDM5B|MRPL55|NAXE|PYGO2|RRP15|SCAMP3|TADA1|TAF1A|TBCE|TMEM9|UBE2Q1|YY1AP1	2.51590574856e-12	0	2.51590574856e-12		0	2.51590574856e-12	
Human Liver_Skawran08_185genes (18277965-Table4a)	74	ABCB10|ACBD3|ADAM15|ADIPOR1|ARHGEF2|ARID4B|ARV1|CAPN2|CCT3|CLK2|COG2|DAP3|DYRK3|EFNA1|EFNA4|EGLN1|ELK4|ENAH|EPRS|FBXO28|FDPS|GALNT2|GBA|GGPS1|GNPAT|GUK1|HCN3|IRF6|ITPKB|KCNK1|KCTD3|KLHL12|KRTCAP2|LPGAT1|LYPLAL1|MAPKAPK2|MTX1|NAXE|NUP133|NVL|PARP1|PBXIP1|PFKFB2|PMF1|PMVK|PPP1R15B|PPP2R5A|PSEN2|PYGO2|RAB25|RABIF|RBBP5|RCOR3|RIT1|RNPEP|RPS6KC1|RUSC1|SCAMP3|SERTAD4|SHC1|SIPA1L2|SLC41A1|SSR2|TAF1A|TAF5L|TBCE|TMEM9|TOMM20|TP53BP2|TRAF5|TRIM11|TSNAX|TTC13|WDR26	1.23938832165e-82	0	1.23938832165e-82		0	1.23938832165e-82	
Human Prostate_Hendriksen06_33genes (16707422-tableS3a)	5	CAMSAP2|MPZL1|SLC39A10|SPHAR|SWT1	0.000420226968329	0	0.000420226968329		0	0.000420226968329	
Human Stomach_Lee04_18genes (15467184-Table2b)	4	GUK1|PRDX6|SRP9|SSR2	0.000279297388924	0	0.000279297388924		0	0.000279297388924	
Human Stomach_Leung06_20genes (16575401-Table3)	4	ILF2|MTX1|PRUNE1|SF3B4	0.000212967241866	0	0.000212967241866		0	0.000212967241866	
Human Uterine_Luo05_78genes (15604209-Table2c)	7	ARNT|EFNA1|HAX1|NDUFS2|RBM8A|SETDB1|TACSTD2	0.000690985094254	0	0.000690985094254		0	0.000690985094254	
Human Viral_Cairo08_588genes (19061838-TableS3)	27	ANGEL2|ARID4B|CAMSAP2|CCT3|CD46|COQ8A|FDPS|GNPAT|HEATR1|ILF2|KDM5B|KHDC4|MCL1|MPZL1|MTR|NUP133|PRUNE1|PSMD4|RCOR3|RPS6KC1|SPHAR|SUCO|TBCE|TOMM20|TOR3A|UBAP2L|VPS45	1.59893940168e-06	0	1.59893940168e-06		0	1.59893940168e-06	
KIM_BIPOLAR_DISORDER_OLIGODENDROCYTE_DENSITY_CORR_UP	27	ARHGEF2|CAMSAP2|CCT3|DEGS1|DENND4B|ENSA|FDPS|GNPAT|HDGF|KIFAP3|MGST3|MPC2|PCP4|PEX11B|PMVK|PRDX6|PSMB4|RNF187|RUSC1|SCAMP3|SF3B4|SNRPE|SPHAR|SRP9|TIPRL|TSNAX|VPS72	0.000780784104501	0	0.000780784104501		0	0.000780784104501	
KOINUMA_TARGETS_OF_SMAD2_OR_SMAD3	32	ARHGEF5|B3GALNT2|BAIAP2L1|CNIH4|DEDD|DENND1B|DIEXF|EFNA1|ENAH|F11R|GBAP1|GRHL3|GTF2IRD1|INTS7|IRF2BP2|IRF6|KCNK1|LGALS3|LGALS8|MCL1|MGST3|MPZL1|NME7|PFKFB2|PIP5K1A|SERTAD4|SMAD3|SMG7|SNRPE|STX6|TAGLN2|YOD1	0.000282094668313	0	0.000282094668313		0	0.000282094668313	
KOYAMA_SEMA3B_TARGETS_DN	29	BROX|C1ORF35|CAMSAP2|CCT3|CDC42SE1|CDC73|DAP3|EFNA1|FLVCR1|GLRX2|GOLPH3L|GON4L|GPATCH4|KLHL20|MPC2|NDUFS2|PSMB4|RFX5|SCAMP3|SERTAD4|SSR2|TAGLN2|TBCE|TRAF5|TSACC|TSNAX|TTC13|VAMP4|XPR1	1.86059092774e-09	0	1.86059092774e-09		0	1.86059092774e-09	
LEF1_Q2	19	ARNT|DYRK3|EDEM3|EFNA4|GOLPH3L|NECTIN4|NEK7|PRUNE1|SCAMP3|SDHC|SMG7|SWT1|TACSTD2|TMEM9|TRMT1L|UAP1|UBAP2L|ZBTB18|ZBTB41	5.8568640048e-08	0	5.8568640048e-08		0	5.8568640048e-08	
LIN_MELANOMA_COPY_NUMBER_UP	11	ARNT|CDC42SE1|ENSA|MRPL9|PI4KB|PIP5K1A|PRUNE1|PSMB4|PSMD4|RFX5|SETDB1	1.27974039884e-07	0	1.27974039884e-07		0	1.27974039884e-07	
LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER	32	ARHGEF11|ARNT|B4GALT3|DEDD|DENND4B|DUSP12|HAX1|HDGF|IGSF8|ILF2|JTB|MRPL9|NAXE|NDUFS2|NIPSNAP2|PI4KB|PIP5K1A|PMF1|PMVK|PRCC|PSMB4|PYGO2|RIT1|S100A13|SETDB1|SHC1|SLC39A1|SNAPIN|SSR2|TDRKH|TPM3|USP21	1.13395591037e-18	0	1.13395591037e-18		0	1.13395591037e-18	
MARSON_BOUND_BY_FOXP3_STIMULATED	46	APH1A|C1ORF43|C1ORF74|CHD1L|DAP3|DENND1B|DIEXF|ELK4|ETV3|FLAD1|GOLPH3L|IGSF8|KDM5B|KHDC4|LGALS8|LYSMD1|MCL1|METTL13|NEK7|PIP5K1A|PMVK|POLR3C|PPP2R5A|PRCC|PRDX6|PRUNE1|PSMD4|RNF115|SETDB1|SHC1|SLC39A10|SLC41A1|SMG5|SMG7|TBCE|TFB2M|TMEM79|TNFRSF18|TOR1AIP1|TOR1AIP2|TRIM17|UBAP2L|USF1|VAMP4|VPS72|WDR26	1.64275510377e-07	0	1.64275510377e-07		0	1.64275510377e-07	
MAZ_Q6	28	ARHGEF2|BCL9|CRTC2|EFNA1|ENSA|FAM189B|FDPS|GABPB2|GALNT2|KRTCAP2|MPC2|PIAS3|PIP5K1A|PPOX|RFX5|RNF2|RPRD2|SDE2|SETDB1|SHC1|SMG7|STX6|TOR1AIP2|TPM3|TRIM46|XPR1|ZNF496|ZNF687	1.87275858618e-16	0	1.87275858618e-16		0	1.87275858618e-16	
MODULE_239	19	ACBD3|ADIPOR1|ADSS|ARPC5|BAIAP2L1|C1ORF43|DEGS1|LPGAT1|NCSTN|NUP133|PPP2R5A|PRUNE1|SRP9|SUCO|TADA1|TBCE|TOMM20|TOR1AIP1|VPS72	3.415666004e-12	0	3.415666004e-12		0	3.415666004e-12	
MORF_DAP3	15	ARPC5|CCT3|DAP3|EPRS|FDPS|HAX1|ILF2|JTB|MRPL9|NIPSNAP2|PIGC|PSMB4|SNRPE|SRP9|SSR2	8.75800889462e-06	0	8.75800889462e-06		0	8.75800889462e-06	
MORF_IKBKG	10	ADAM15|ARPC4|B4GALT3|DGCR11|FAM189B|MR1|MTX1|PMF1|RBM8A|RPRD2	0.000356835606805	0	0.000356835606805		0	0.000356835606805	
MORF_PML	10	ADAM15|ARPC4|B4GALT3|DGCR11|FAM189B|HTR7|MR1|MTX1|PMF1|RBM8A	0.000611579737862	0	0.000611579737862		0	0.000611579737862	
MORF_PRKAR1A	10	ARPC5|DAP3|ENSA|JTB|PIGC|PSMB4|SDHC|SNRPE|SRP9|SSR2	0.000647391732777	0	0.000647391732777		0	0.000647391732777	
MORF_PSMC2	9	ENSA|FAM20B|PEX11B|PIGC|POLR3C|PSMB4|SDHC|SMG7|SRP9	0.00068919646781	0	0.00068919646781		0	0.00068919646781	
MORF_RAB1A	14	ARPC4|ARPC5|B4GALT3|ENSA|ILF2|JTB|MRPL9|PEX11B|PIGC|PSMB4|RPRD2|SDHC|SSR2|TOR1AIP1	4.23444406819e-05	0	4.23444406819e-05		0	4.23444406819e-05	
MYC_Q2	11	ADSS|KRTCAP2|NIT1|PFDN2|POGK|PSEN2|RFX5|RUSC1|TAGLN2|TFB2M|TRIM46	0.000955164555827	0	0.000955164555827		0	0.000955164555827	
MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_17	7	ARNT|BCL9|CDC73|FH|PRCC|SDHC|TPM3	6.64494205731e-08	0	6.64494205731e-08		0	6.64494205731e-08	
MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_24	6	ARNT|BCL9|CDC73|PRCC|SDHC|TPM3	1.20823802806e-07	0	1.20823802806e-07		0	1.20823802806e-07	
Mouse Breast_Crawford07_981genes (18081427-TableS8)	47	ACBD3|ACBD6|ADIPOR1|ALDH9A1|ANGEL2|ARL8A|BAIAP2L1|BCL9|COQ8A|DCAF6|DEDD|DENND1B|F11R|FBXO28|IGSF8|KIFAP3|LPGAT1|MPC2|MPZL1|MR1|NAXE|NDUFS2|NENF|NIPSNAP2|NIT1|NME7|PEX19|PFDN2|POGK|PRDX6|RAB13|RABIF|RCOR3|SDHC|SFT2D2|SNAP47|SNAPIN|SRP9|STX6|TATDN3|TIPRL|TOR1AIP2|UFC1|USP21|VAMP4|WDR26|XPR1	1.03473281463e-13	0	1.03473281463e-13		0	1.03473281463e-13	
Myeloma_HY_subgroup_down	10	DPM3|GBA|IRF2BP2|MSTO1|NTAN1|OPN3|TAGLN2|TBCE|TP53BP2|TSEN15	2.3235394154e-08	0	2.3235394154e-08		0	2.3235394154e-08	
NFMUE1_Q6	15	ARF1|ARNT|C1ORF131|CHTOP|COX20|DAP3|ENSA|GABPB2|GNPAT|INTS7|PIAS3|PPP1R15B|RPRD2|USF1|XPR1	0.000131561456173	0	0.000131561456173		0	0.000131561456173	
NIKOLSKY_BREAST_CANCER_1Q21_AMPLICON	24	ADAM15|CLK2|DPM3|EFNA1|EFNA3|EFNA4|FAM189B|FDPS|FLAD1|GBA|HCN3|KRTCAP2|MRPL9|MTX1|OAZ3|PBXIP1|PMVK|PYGO2|RUSC1|SCAMP3|SHC1|SLC50A1|TDRKH|TRIM46	7.44546250616e-33	0	7.44546250616e-33		0	7.44546250616e-33	
PATIL_LIVER_CANCER	70	ABCB10|ACBD3|ADAM15|APH1A|ARID4B|ARNT|B4GALT3|BAIAP2L1|BOLA1|C1ORF43|CD46|CDC42SE1|CLK2|CNIH4|DEGS1|DUSP12|EFNA1|ENAH|FAM189B|FDPS|FLAD1|FLVCR1-AS1|GNPAT|GON4L|ILF2|INTS7|IRF2BP2|JMJD4|KDM5B|LPGAT1|MPZL1|MSTO1|MTX1|NCSTN|NUP133|PEA15|PIGC|PPOX|PPP2R5A|PRCC|PRUNE1|PYGO2|RAB3GAP2|RFX5|RNF187|RPRD2|RUSC1|SCAMP3|SF3B4|SHC1|SLC39A1|SLC39A10|SMG5|SMG7|SNRPE|SNX27|SUCO|TADA1|TBCE|TMCO1|TOMM20|TP53BP2|TRMT1L|UBAP2L|UBE2Q1|UCHL5|USP21|VPS72|XPR1|YY1AP1	4.5476904713e-28	0	4.5476904713e-28		0	4.5476904713e-28	
PEA3_Q6	18	APH1A|CDC42SE1|CRTC2|ELK4|ETV3|GOLPH3L|GPR137B|ITPKB|MAPKAPK2|MR1|NDUFS2|PBXIP1|PI4KB|PRDX6|PRUNE1|RAB3GAP2|SLC41A1|ZNF687	5.26639617304e-06	0	5.26639617304e-06		0	5.26639617304e-06	
REACTOME_REGULATED_PROTEOLYSIS_OF_P75NTR	3	APH1A|NCSTN|PSEN2	0.000972558782883	0	0.000972558782883		0	0.000972558782883	
RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP	17	AHCTF1|BOLA1|CCT3|CHD1L|ERO1B|FLVCR1|GATAD2B|IARS2|IRF2BP2|KLHL12|PARP1|PSMB4|SNRPE|TOMM20|TRAF5|USP21|ZNF496	4.7453829593e-06	0	4.7453829593e-06		0	4.7453829593e-06	
SHEN_SMARCA2_TARGETS_UP	20	ADSS|ANGEL2|ARID4B|CHTOP|DCAF6|FBXO28|KIFAP3|LGALS8|MRPS14|NEK7|NUP133|PEX11B|PEX19|RBM34|RCOR3|SRP9|TOR1AIP1|TRMT1L|TSNAX|VPS45	0.000514585505679	0	0.000514585505679		0	0.000514585505679	
SMITH_LIVER_CANCER	7	FDPS|PMVK|PPP2R5A|SDHC|TBCE|TP53BP2|ZBTB18	2.35251327851e-05	0	2.35251327851e-05		0	2.35251327851e-05	
SRY_01	19	ANGEL2|ARID4B|BCL9|C1ORF43|CHTOP|CRTC2|DEDD|EFNA1|EFNA4|F11R|GGPS1|METTL18|MTX1|RBM8A|TDRD5|TOR1AIP2|TSEN15|USF1|ZBTB18	8.62026532946e-08	0	8.62026532946e-08		0	8.62026532946e-08	
STAT1_02	14	EIF2S3|FAM20B|GABPB2|ISG20L2|PI4KB|PIGC|SDHC|SF3B4|SHC1|STX6|TMCO1|UFC1|USF1|ZBTB41	0.000461117922331	0	0.000461117922331		0	0.000461117922331	
TEF1_Q6	21	ADIPOR1|CDC42SE1|DEDD|DENND1B|DPM3|ELF3|ETV3|HDGF|MAPKAPK2|MTX1|PAQR6|PBXIP1|PEA15|PIAS3|POGK|PRUNE1|RNF2|RNF207|SDCCAG8|SHC1|TOR1AIP2	2.74431160854e-09	0	2.74431160854e-09		0	2.74431160854e-09	
USF2_Q6	20	ADSS|ARPC5|BCL9|C1ORF43|KRTCAP2|NIT1|PFDN2|POGK|POLR3C|PSEN2|RFX5|RNF115|RRP15|RUSC1|SCAMP3|STX6|TADA1|TAGLN2|TFB2M|TRIM46	1.44042164872e-07	0	1.44042164872e-07		0	1.44042164872e-07	
ZHAN_MULTIPLE_MYELOMA_HP_DN	9	DPM3|IRF2BP2|MSTO1|NTAN1|OPN3|TAGLN2|TBCE|TP53BP2|TSEN15	3.12611689879e-07	0	3.12611689879e-07		0	3.12611689879e-07	
amyloid precursor protein catabolic process [GoID:GO:0042987; evidenceTypes:IDA|IEA|IGI|IMP|ISS|TAS]	5	APH1A|EFNA1|EFNA3|NCSTN|PSEN2	0.00017723604012	0	0.00017723604012		0	0.00017723604012	
chr1q21	77	ACP6|ADAM15|ARHGEF2|ARHGEF11|ARNT|B4GALT3|BCL9|BOLA1|C1ORF43|CDC42SE1|CHD1L|CHTOP|CLK2|CRTC2|DENND4B|DUSP12|EFNA1|EFNA3|EFNA4|ENSA|ETV3|F11R|FAM189B|GABPB2|GATAD2B|GBAP1|GOLPH3L|GPR89B|HAX1|HCN3|HDGF|ILF2|INTS3|JTB|LYSMD1|MCL1|MRPL9|MRPL24|MRPS21|MTX1|NAXE|NIT1|OAZ3|PEA15|PEX11B|PI4KB|PIAS3|POLR3C|PRCC|PRPF3|PRUNE1|PSMB4|PSMD4|RAB13|RBM8A|RFX5|RIT1|RPRD2|RUSC1|S100A13|SCAMP3|SDHC|SETDB1|SHC1|SLC39A1|SMG5|SNX27|SSR2|TAGLN2|TDRKH|TPM3|TRIM46|UBAP2L|UBQLN4|VPS45|VPS72|ZNF687	1.04761477014e-78	0	1.04761477014e-78		0	1.04761477014e-78	
chr1q22	35	ALDH9A1|ASH1L-AS1|ATF6|DAP3|DPM3|FDPS|FLAD1|GBA|GLMP|GON4L|GPATCH4|IGSF9|KHDC4|KRTCAP2|LAMTOR2|MSTO1|NCSTN|NECTIN4|PBXIP1|PEX19|PIGM|PIP5K1A|PMF1|PPOX|PYGO2|RAB25|SLC25A44|SLC50A1|SNAPIN|TMCO1|TMEM79|UBE2Q1|USF1|USP21|YY1AP1	5.0248336991e-42	0	5.0248336991e-42		0	5.0248336991e-42	
chr1q23	18	CCT3|COPA|DCAF6|DEDD|DUSP23|IGSF8|ISG20L2|MGST3|MRPS14|NDUFS2|PAQR6|PFDN2|PIGC|POGK|TIPRL|TOMM40L|UAP1|UFC1	1.84486069888e-15	0	1.84486069888e-15		0	1.84486069888e-15	
chr1q24	14	GORAB|METTL13|METTL18|MPC2|MPZL1|NME7|PRDX6|SCYL3|SFT2D2|SUCO|TADA1|TDRD5|TOR1AIP1|VAMP4	7.28191255536e-14	0	7.28191255536e-14		0	7.28191255536e-14	
chr1q25	16	ACBD6|CDC73|EDEM3|FAM20B|KLHL20|MR1|ODR4|RNF2|SMG7|STX6|SWT1|TOR1AIP2|TOR3A|TRMT1L|TSEN15|XPR1	6.11191180573e-14	0	6.11191180573e-14		0	6.11191180573e-14	
chr1q31	8	C1ORF53|DENND1B|NEK7|PFKFB2|PSEN2|SLC41A1|TMEM183A|ZBTB41	1.43815108779e-06	0	1.43815108779e-06		0	1.43815108779e-06	
chr1q32	35	ABCB10|ADIPOR1|ANGEL2|ARL8A|C1ORF74|CAMSAP2|CD46|DIEXF|DSTYK|DYRK3|ELF3|ELK4|ENAH|FLVCR1|FLVCR1-AS1|GUK1|INTS7|IRF6|KDM5B|KLHL12|MAPKAPK2|NENF|PPP1R15B|PPP2R5A|RABIF|RBBP5|RCOR3|RNPEP|SERTAD4|SNRPE|TATDN3|TLR5|TRAF5|UCHL5|YOD1	9.13212431053e-30	0	9.13212431053e-30		0	9.13212431053e-30	
chr1q41	15	ACBD3|CAPN2|DEGS1|EPRS|GALNT2|IARS2|KCTD3|LYPLAL1|NVL|PARP1|RPS6KC1|RRP15|SUSD4|TLR5|TMEM9	1.04295591253e-17	0	1.04295591253e-17		0	1.04295591253e-17	
chr1q42	47	ARF1|ARID4B|ARV1|B3GALNT2|BPNT1|C1ORF35|C1ORF131|C1ORF198|CNIH4|COA6|COG2|COQ8A|DNAH14|EDARADD|EGLN1|ERO1B|EXOC8|FBXO28|FH|GNPAT|GPR137B|IRF2BP2|ITPKB|JMJD4|KCNK1|MRPL55|NUP133|RBM34|RNF187|SDE2|SIPA1L2|SNAP47|SPHAR|SPRTN|SRP9|TAF1A|TAF5L|TBCE|TOMM20|TP53BP2|TRIM11|TRIM17|TSNAX|TTC13|URB2|WDR26|ZNF678	4.61929307519e-58	0	4.61929307519e-58		0	4.61929307519e-58	
chr1q43	6	GGPS1|HEATR1|LGALS8|MTR|OPN3|SDCCAG8	8.11777716894e-07	0	8.11777716894e-07		0	8.11777716894e-07	
chr1q44	11	AHCTF1|CEP170|COX20|DESI2|SH3BP5L|TFB2M|ZBTB18|ZNF124|ZNF496|ZNF670|ZNF672	5.55265283671e-13	0	5.55265283671e-13		0	5.55265283671e-13	
ephrin receptor signaling pathway [GoID:GO:0048013; evidenceTypes:IBA|IDA|IEA|ISS|TAS]	8	APH1A|ARPC4|ARPC5|EFNA1|EFNA3|EFNA4|NCSTN|PSEN2	0.000367163825578	0	0.000367163825578		0	0.000367163825578	
protein channel activity [GoID:GO:0015266; evidenceTypes:IBA|TAS]	3	MCL1|TOMM20|TOMM40L	0.000972558782883	0	0.000972558782883		0	0.000972558782883	
telomerase holoenzyme complex [GoID:GO:0005697; evidenceTypes:IBA|IDA|TAS]	4	NVL|SMG5|SMG7|SNRPE	0.00084569021481	0	0.00084569021481		0	0.00084569021481	
